| Protein ZmPHD43 | |
|---|---|
|
ZmPHD43 is a protein in the PHD family.
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| Information | |
| Coreg Name: | ZmPHD43 |
| Species: | Maize |
| Coreg Family: | PHD |
| Gene Name(Synonym): | PHD43 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmPHD43
ZmPHD43 is a protein in the PHD family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00628 | |
| Zm00001eb145630_T002 |  |
| Zm00001eb145630_T001 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d042613 | DAPseq |  |
sequence | fimo | position |
| Zm00001d042613 | DAPseq |  |
sequence | fimo | position |
| Zm00001d042613 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d042613 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmPHD43 is the regulator
Interactions where ZmPHD43 is the target
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Zm00001eb145630_T002 from maize genome v5
Amino Acid Sequence
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MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00628 |
|
| PF00628 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CAGGAGCGTTGCCTTGAACAATTAA...
CAGGAGCGTTGCCTTGAACAATTAAGGAGGAGCGTTCCTCCCCTCTTGAGCTGTATCCAATATATATCTCTCTCCCGCACATCTTCCCTGGATACCGTGCTCCTCTTGCACTCCCCCAAAACGCAGCTCCCTCAGCCAATCTTCCCCAGAGCGCGGCTAGGCACAGGCATATGACTTTTCACTCCATAGAATCGAGTAGGGCCCAGATCTGATTGATTCCCTGATGGTCTGGTAGTACTGGGTTACCTGCTATGGGGAGAAGAGCTCAACAAAGTGCAGTAATTCCCCATTCGATCCAAATGGACTGGCCTTGCTTCAAAGGCATCTGAAGTATGGACCCCTCTGAACTTCCGGAGCTGTCCCGTACTGCTATGTTGATCTGCTGCAAGGTGTGTGGAGGACCTGAAGAGGTGGACAAGAGGTTCCTGATCTGTGACCACTATCTTTGCCTGTACAAGTACTACCACATTAGTTGCCTGACTACCGAGCAGATTGCAAGTGATGTGCAGATGGGCAGCCAGCGCTGGTACTGTCCATCTTGCCTCTGCCGTGTCTGCCTGTGCGACACGGACGATGACCAGATCATCCTGTGTGACTGCTGCGATCAGGGCTATCATCTCTACTGCCTCAGTCCTCCAAGAAGAAAGGTGCCCAAGGGGCATTGGGACTGCGAACCCTGCAAGGAGCGGAGGGAGAAGGAGAAGAGGATACTGATGCTCCACAGGAAGGATTACGATGAAGACATCCTGAAGAGTGGCGAGTTCCATGGACCGAACTTGCTGCTTAAGGCCGCGAAAAAGGTGAAGCGCGATGAGGAGGTGAAGGTGGCTAAGACTAAGAGCACCAGAAAGTAAGAGGCATGGAGATTGTGAGCGAGCGGATTTTGTGTTCTCTGCCATGATCAGCTAGCGCCAAGTTTCTGCCCTGGGAGGCTCAGCTCTGCCCAGCTGAATGGGACGGGCGGCTGAGGGCCGTAGAAACCTGTGCTTTCTGAACTGAATGGTTAGAGAACATGAATTCGCTAGAATTGCTCCAGTCTATTTCTTTACAATCGTTTCTTTCAACCCGGCAGGGTCATACTTGACAAACTTGCCAGCGCCTGAACTTGAGAAGGTTGTGATCACCCGTGATGCTTTTAAACCCCGTGATGCTTTTAATGGTTTATGAAACTGGATCTTGGTAGACTTAATTACCCGTGATGCTTTTAATGGTTTATGGAACTGAATCTTGGTAGAATTAAAGTATCTGTTGCTGTGTTGAG
GRMZM2G025703_T01 from maize genome v3
Amino Acid Sequence
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MEGLLEKLRQTKFNSPQELLYLFCCCPDRER
Nucleotide Sequence
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CCAAGTGTTTGAAGAGATTGCCAGC...
CCAAGTGTTTGAAGAGATTGCCAGCTAGATTAGAATCTGTCATCAGATCGCTTGAGATAGTTAGCATTTGAAAGTGAAACAAATGGAAGGCCTATTAGAAAAACTGAGACAAACAAAATTTAATTCACCACAAGAGCTTCTTTATCTTTTTTGTTGTTGTCCTGATCGTGAAAGATAACCTTTTCAAACTGCTATTTTAGGTACCAGTGGCACATACATCATGAGAATGAAGAGTTGAACCAAGATGAGAAGTGGTAGTGTGCTGGTAAAAACTTGTGCAACCTCTTACTTTTAAGAAACGAAAGTATACTACATTCCACGAAAAGTAAGGCTAACCTTAGAGTGCTCTCCAGCCTAAGAAAATAACGTACTGGAAACTTATATTTGCCTTGAGTTTATAAAGTACTAATCAATATCATCAATTTTTTACTTCTTCC
GRMZM2G025703_T02 from maize genome v3
Amino Acid Sequence
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MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
Nucleotide Sequence
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GTCCTGATCGTGAAAGATAACCTTT...
GTCCTGATCGTGAAAGATAACCTTTTCAAACTGCTATTTTAGGTACCAGTGGCACATACATCATGAGAATGAAGAGTTGAACCAAGATGAGAAGTGGTAGTGTGCTGGATCCTCCCCTCTTTTTTTTGGAAGAAGGCAGGAGCGTTGCCTTGAACAATTAAGGAGGAGCGTTCCTCCCCTCTTGAGCTGTATCCAATATATATCTCTCTCCCGCACATCTTCCCTGGATACCGTGCTCCTCTTGCACTCCCCCAAAACGCAGCTCCCTCAGCCAATCTTCCCCAGAGCGCGGCTAGGCACAGGCATCTGAAGTATGGACCCCTCTGAACTTCCGGAGCTGTCCCGTACTGCTATGTTGATCTGCTGCAAGGTGTGTGGAGGACCTGAAGAGGTGGACAAGAGGTTCCTGATCTGTGACCACTATCTTTGCCTGTACAAGTACTACCACATTAGTTGCCTGACTACCGAGCAGATTGCAAGTGATGTGCAGATGGGCAGCCAGCGCTGGTACTGTCCATCTTGCCTCTGCCGTGTCTGCCTGTGCGACACGGACGATGACCAGATCATCCTGTGTGACTGCTGCGATCAGGGCTATCATCTCTACTGCCTCAGTCCTCCAAGAAGAAAGGTGCCCAAGGGGCATTGGGACTGCGAACCCTGCAAGGAGCGGAGGGAGAAGGAGAAGAGGATACTGATGCTCCACAGGAAGGATTACGATGAAGACATCCTGAAGAGTGGCGAGTTCCATGGACCGAACTTGCTGCTTAAGGCCGCGAAAAAGGTGAAGCGCGATGAGGAGGTGAAGGTGGCTAAGACTAAGAGCACCAGAAAGTAAGAGGCATGGAGATTGTGAGCGAGCGGATTTTGTGTTCTCTGCCATGATCAGCTAGCGCCAAGTTTCTGCCCTGGGAGGCTCAGCTCTGCCCAGCTGAATGGGACGGGCGGCTGAGGGCCGTAGAAACCTGTGCTTTCTGAACTGAATGGTTAGAGAACATGAATTCGCTAGAATTGCTCCAGTCTATTTCTTTACAATCGTTTCTTTCAACCCGGCAGGGTCATACTTGACAAACTTGCCAGCGCCTGAACTTGAGAAGGTTGTGATCACCCGTGATGCTTTTAAACCCCGTGATGCTTTTAATGGTTTATGAAACTGGATCTTGGTAGACTTAATTACCCGTGATGCTTTTAATGGTTTATGGAACTGAATCTTGGTAGAATTAAAGTATCTGTTGCTGTGTT
GRMZM2G025703_T03 from maize genome v3
Amino Acid Sequence
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MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
Nucleotide Sequence
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GTCCTGATCGTGAAAGATAACCTTT...
GTCCTGATCGTGAAAGATAACCTTTTCAAACTGCTATTTTAGGTACCAGTGGCACATACATCATGAGAATGAAGAGTTGAACCAAGATGAGAAGTGGTAGTGTGCTGGATCCTCCCCTCTTTTTTTTGGAAGAAGGCAGGAGCGTTGCCTTGAACAATTAAGGAGGAGCGTTCCTCCCCTCTTGAGCTGTATCCAATATATATCTCTCTCCCGCACATCTTCCCTGGATACCGTGCTCCTCTTGCACTCCCCCAAAACGCAGCTCCCTCAGCCAATCTTCCCCAGAGCGCGGCTAGGCACAGGCATATGACTTTTCACTCCATAGAATCGAGTAGGGCCCAGATCTGATTGATTCCCTGATGGTCTGGTAGTACTGGGTTACCTGCTATGGGGAGAAGAGCTCAACAAAGTGCAGTAATTCCCCATTCGATCCAAATGGACTGGCCTTGCTTCAAAGGCATCTGAAGTATGGACCCCTCTGAACTTCCGGAGCTGTCCCGTACTGCTATGTTGATCTGCTGCAAGGTGTGTGGAGGACCTGAAGAGGTGGACAAGAGGTTCCTGATCTGTGACCACTATCTTTGCCTGTACAAGTACTACCACATTAGTTGCCTGACTACCGAGCAGATTGCAAGTGATGTGCAGATGGGCAGCCAGCGCTGGTACTGTCCATCTTGCCTCTGCCGTGTCTGCCTGTGCGACACGGACGATGACCAGATCATCCTGTGTGACTGCTGCGATCAGGGCTATCATCTCTACTGCCTCAGTCCTCCAAGAAGAAAGGTGCCCAAGGGGCATTGGGACTGCGAACCCTGCAAGGAGCGGAGGGAGAAGGAGAAGAGGATACTGATGCTCCACAGGAAGGATTACGATGAAGACATCCTGAAGAGTGGCGAGTTCCATGGACCGAACTTGCTGCTTAAGGCCGCGAAAAAGGTGAAGCGCGATGAGGAGGTGAAGGTGGCTAAGACTAAGAGCACCAGAAAGTAAGAGGCATGGAGATTGTGAGCGAGCGGATTTTGTGTTCTCTGCCATGATCAGCTAGCGCCAAGTTTCTGCCCTGGGAGGCTCAGCTCTGCCCAGCTGAATGGGACGGGCGGCTGAGGGCCGTAGAAACCTGTGCTTTCTGAACTGAATGGTTAGAGAACATGAATTCGCTAGAATTGCTCCAGTCTATTTCTTTACAATCGTTTCTTTCAACCCGGCAGGGTCATACTTGACAAACTTGCCAGCGCCTGAACTTGAGAAGGTTGTGATCACCCGTGATGCTTTTAAACCCCGTGATGCTTTTAATGGTTTATGAAACTGGATCTTGGTAGACTTAATTACCCGTGATGCTTTTAATGGTTTATGGAACTGAATCTTGGTAG
Zm00001d042613_T001 from maize genome v4
Amino Acid Sequence
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MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRKCKFAFTFGN
Nucleotide Sequence
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ATGGACCCCTCTGAACTTCCGGAGC...
ATGGACCCCTCTGAACTTCCGGAGCTGTCCCGTACTGCTATGTTGATCTGCTGCAAGGTGTGTGGAGGACCTGAAGAGGTGGACAAGAGGTTCCTGATCTGTGACCACTATCTTTGCCTGTACAAGTACTACCACATTAGTTGCCTGACTACCGAGCAGATTGCAAGTGATGTGCAGATGGGCAGCCAGCGCTGGTACTGTCCATCTTGCCTCTGCCGTGTCTGCCTGTGCGACACGGACGATGACCAGATCATCCTGTGTGACTGCTGCGATCAGGGCTATCATCTCTACTGCCTCAGTCCTCCAAGAAGAAAGGTGCCCAAGGGGCATTGGGACTGCGAACCCTGCAAGGAGCGGAGGGAGAAGGAGAAGAGGATACTGATGCTCCACAGGAAGGATTACGATGAAGACATCCTGAAGAGTGGCGAGTTCCATGGACCGAACTTGCTGCTTAAGGCCGCGAAAAAGGTGAAGCGCGATGAGGAGGTGAAGGTGGCTAAGACTAAGAGCACCAGAAAGTGCAAATTTGCGTTCACCTTTGGAAATTAG
Zm00001eb145630_T001 from maize genome v5
Amino Acid Sequence
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MDPSELPELSRTAMLICCKVCGGPEEVDKRFLICDHYLCLYKYYHISCLTTEQIASDVQMGSQRWYCPSCLCRVCLCDTD
DDQIILCDCCDQGYHLYCLSPPRRKVPKGHWDCEPCKERREKEKRILMLHRKDYDEDILKSGEFHGPNLLLKAAKKVKRD
EEVKVAKTKSTRK
Nucleotide Sequence
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GGAAGAAGGCAGGAGCGTTGCCTTG...
GGAAGAAGGCAGGAGCGTTGCCTTGAACAATTAAGGAGGAGCGTTCCTCCCCTCTTGAGCTGTATCCAATATATATCTCTCTCCCGCACATCTTCCCTGGATACCGTGCTCCTCTTGCACTCCCCCAAAACGCAGCTCCCTCAGCCAATCTTCCCCAGAGCGCGGCTAGGCACAGGCATCTGAAGTATGGACCCCTCTGAACTTCCGGAGCTGTCCCGTACTGCTATGTTGATCTGCTGCAAGGTGTGTGGAGGACCTGAAGAGGTGGACAAGAGGTTCCTGATCTGTGACCACTATCTTTGCCTGTACAAGTACTACCACATTAGTTGCCTGACTACCGAGCAGATTGCAAGTGATGTGCAGATGGGCAGCCAGCGCTGGTACTGTCCATCTTGCCTCTGCCGTGTCTGCCTGTGCGACACGGACGATGACCAGATCATCCTGTGTGACTGCTGCGATCAGGGCTATCATCTCTACTGCCTCAGTCCTCCAAGAAGAAAGGTGCCCAAGGGGCATTGGGACTGCGAACCCTGCAAGGAGCGGAGGGAGAAGGAGAAGAGGATACTGATGCTCCACAGGAAGGATTACGATGAAGACATCCTGAAGAGTGGCGAGTTCCATGGACCGAACTTGCTGCTTAAGGCCGCGAAAAAGGTGAAGCGCGATGAGGAGGTGAAGGTGGCTAAGACTAAGAGCACCAGAAAGTAAGAGGCATGGAGATTGTGAGCGAGCGGATTTTGTGTTCTCTGCCATGATCAGCTAGCGCCAAGTTTCTGCCCTGGGAGGCTCAGCTCTGCCCAGCTGAATGGGACGGGCGGCTGAGGGCCGTAGAAACCTGTGCTTTCTGAACTGAATGGTTAGAGAACATGAATTCGCTAGAATTGCTCCAGTCTATTTCTTTACAATCGTTTCTTTCAACCCGGCAGGGTCATACTTGACAAACTTGCCAGCGCCTGAACTTGAGAAGGTTGTGATCACCCGTGATGCTTTTAAACCCCGTGATGCTTTTAATGGTTTATGAAACTGGATCTTGGTAGACTTAATTACCCGTGATGCTTTTAATGGTTTATGGAACTGAATCTTGGTAGAATTAAAGTATCTGTTGCTGTGTTGAGAAATGTTATGGTTTCTAGTTCGTTCTTGCAGGT
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